rs49644694 SNP Detail

Summary

• ID
  rs49644694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126222097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTGGTCC TGAGACCCAT
  CGGCCCACCA TGCTTAGGGA GAGCTTTCTC ACCAGCTCAC CAAGCACCCC ATCCTGGAAG
  CCAGCCTGGT ATTTCATGAC TGAATTTGAG CCCTCGGTTG CTTAAAACAA ATCCTCTGCA
  TGTTTTAAAT CATGGATGCT GGGGTTTTTT TTTTTTTTTT CATTTTGCAA ATGGTATTAA
  Y
  AGAAACATTC TCTTCCAAAA GCAGCTCTAT ATAATAGGAC CTCATGGTGC TCAAGAATAT
  GTAGGGGACT GGCCACAGGT TGTCTCTGGG ACAGCACTGC AAAGAAACAA AGCAACTTCC
  CTGGAAGAAA CCATAGAAAC AGGCTCCTCA AAGCATCTGC ATACATTAGA ACAAGGCAAC
  AATCACGGAG AACCGTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145875144	ENSMUSSNP1709627	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49644694					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126222097 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	within coordinates
Nupr1	nuclear protein transcription regulator 1	321 bp downstream
Rr655536	regulatory region 655536	1215 bp distal
Rr655537	regulatory region 655537	664 bp distal
Rr655538	regulatory region 655538	517 bp distal
Tssr69045	transcription start site region 69045	20 bp downstream
Tssr69046	transcription start site region 69046	320 bp upstream
Tssr69047	transcription start site region 69047	522 bp upstream