rs49645356 SNP Detail

Summary

• ID
  rs49645356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60962235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCACTCT GTTTAAGGCA
  TTATCCTACA GCATCCCAAA TAGACTAAAA TAATACCTTT AGTAATTGGA TTAATAATAG
  GCAATTAACA TTAGGCAAGT TTTAGGTTCC CTGAGGGCTA CCCATGGAAA CTGCTTATCT
  ACAACAGGTG GCCATTCCCC AGAGTCCACT GTTGCTATCA ACAACTTCAA TCCGACAAAG
  Y
  AATGGCAATT CCAGCAAAAA ATTGGGGAAG GCCAGGAGTC TATCACCATC AAAGGGATGC
  CCTGATTTCC AACAGAGAAG ACTCAGGTCA AAGCTGTGAT CAAAGCACAT AGTTAAACAA
  TGTGCTATAA GTGGTGGTGC TAATTCCTAA TTCACATAGA AATTACATTT TTAGTGATTC
  AAAGATGACA TCAAAGGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52343462	NES15282513	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	C		C
ss323327728	CHEV_10_60589204	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49645356					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52343462	NES15282513	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60962235 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	1221 bp upstream
Rr219927	regulatory region 219927	1166 bp proximal
Rr228137	regulatory region 228137	1767 bp proximal
Sgpl1	sphingosine phosphate lyase 1	within coordinates