rs49645436 SNP Detail

Summary

• ID
  rs49645436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:123034166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAACGTTT CAAAATTAAC
  TAAGGCAAAA CTGCTGTTTC TAAGAATGAA GACGGCTACC TCAGTAGAAC AGTAGGTGAC
  AAGTTAAAGG ATGGGCAATG GTCTCTCCAT TTTTTAAGCC TCCTAGTTTT GGTGGGAAAC
  TCAGTAAGGA AGGGGGTGCC TGCATTAGTG AGGACTGCTG GCCCATCCAA GAGAAAGCAG
  Y
  GTTTCCCTGG TTAGGGTTTG TCAGCTTGAC AGAAACTAAA GTCACTTGGA AAGAGGGGAA
  CCTTAATTAT GGGATTGCCT CCCTTAGAGT AGCCTGTGAT GAGTCAGTGG AGCATTTTCT
  TGTTTAACGA TCGGTGTGGT AAACCCACTG TGGGCAGGTG GTCCTGAGTT GTGTAAGAAA
  ACAAGCTGAG CAAGCCATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52240093	NES15346971	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49645436					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52240093	NES15346971	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:123034166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2311	CpG island 2311	654 bp distal
Gm4129	predicted gene 4129	within coordinates
Gm55025	predicted gene, 55025	1290 bp upstream
Rr224370	regulatory region 224370	365 bp distal
Tssr99665	transcription start site region 99665	1793 bp upstream
Tssr99666	transcription start site region 99666	1300 bp upstream
Tssr99667	transcription start site region 99667	1286 bp upstream
Tssr99668	transcription start site region 99668	1274 bp upstream
Usp15	ubiquitin specific peptidase 15	1266 bp upstream