rs49645469 SNP Detail

Summary

• ID
  rs49645469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:72961039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACCTGAG ATGCGACCCC
  CAGATGGGTC AAGACCCACA GGTTGAGAAA CACTGGTGTG GGTGGCTCTG GGATCACCCT
  GCCTGTGCTT CCCTTCTGAT TCCGCGTCAT AGTCTGGGAC ATATTTTCAC ATGGAATGCC
  ACCCCCAGTA GACAGGGATG GATAGGACAA TTCTCTGTTA GAAAGCACTG GAAATATCAA
  R
  TACAGGCAAG GCACACTGAC CTGCACTCTC TTCCTGAAGT CCCCCCCCAC ACCCGCCCCC
  CCCCGGTGGG GAGTGTCTCC ACAGCCATAG TAAGAAACAT GTCCCCATCA CCTTGGACAA
  GGAGCTGACA GAGAACCATG TGTATTGTTG GGAAAATGTT CCCAAAGGCG TACGTTTAAG
  TACCAGGCTG TGCTATATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61180114	NES16682026	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49645469					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61180114	NES16682026	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:72961039 () rs orientation: forward

Symbol	Name	Function Class
Rr399125	regulatory region 399125	516 bp downstream
Tec	tec protein tyrosine kinase	within coordinates
Tssr46619	transcription start site region 46619	596 bp downstream