rs49645615 SNP Detail

Summary

• ID
  rs49645615
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:75715244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACACATT TAATCCTAGC
  ATTCTAGAGA CAGGCAGGTG CTCTGGAGGC AAAGGCAGGA GGATCTCTGA GTTCAAGGCC
  AGCATAATCT ACAGAGAAAG TTCCAGGACA GCCAAGTTAG GCACTGAAGG AGTTGAAAAA
  CAAAAGGTTG GTGATAATGT CATAAGACAA GGTGCCCATG TCCCAGCTCC AGCAAGCAGC
  A
  GAACTCAGCA GCTTCGGGCA TGTGGCTCTG GCTTTAGAGT CAAGAATAGA AGGGACTACT
  GGGGCAATTG ATGCTGTTTA GCTGGAGCTA AGAAATTAGT GGTGATTATG AAGAGACCAG
  CATCACTGAG GTGAAATCTT CTGGGAAGTA TTTTCTAAAA GCAGAAAGAA GCTGTGTTCT
  AGAAATAGCC GGGGATGTAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148164745	ENSMUSSNP2624323	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49645615					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:75715244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7192	CpG island 7192	1010 bp distal
Gm34851	predicted gene, 34851	110 bp upstream
Gm62305	predicted gene, 62305	891 bp downstream
Rr390927	regulatory region 390927	81 bp upstream
Rr404450	regulatory region 404450	1213 bp downstream
Rr504550	regulatory region 504550	1491 bp distal
Rr504551	regulatory region 504551	1287 bp distal
Rr504552	regulatory region 504552	816 bp distal
Rr504553	regulatory region 504553	833 bp proximal
Tssr131679	transcription start site region 131679	1262 bp downstream
Tssr134873	transcription start site region 134873	1463 bp upstream
Tssr134874	transcription start site region 134874	1441 bp upstream
Zc3h3	zinc finger CCCH type containing 3	1480 bp upstream