rs49647110 SNP Detail

Summary

• ID
  rs49647110
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135716744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACGCCTG CCTGCTTATC
  ACCTGGGTGG GGCAGAGGGA GGAGGAGGGA GCGGCGTGGG AGATGGAACA GTCAGAGCGT
  GGCCAGTTAC TCGGGCGTTT CCATATATAA ATCACTCACA GACAGACACA CAGAGTCCTT
  CATTGCTCCC TCTGGCGGCA AGCAGAGCTT CATCTCTTTC TCCAGGAACC TCAGCTCCTA
  K
  ATGCACTCAG AGAACCAAAA CAAAGTCAAA ACAACAACAA CAACAACAAC AGCATGTTCC
  CACAGACACT TCATTTGGTA ATTTGGGGTT TCTCACTAAA CCACAAGATC CTCAGAGCTC
  ACTAGCAATG GGCAAGCCTA TTCTGAAGTA ACTTGCATGG AAGACAATTC CTTGGGACTC
  AGCAGGTAAA AATGCTTGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145546336	ENSMUSSNP1414178	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49647110					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135716744 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	713 bp distal
Rr419277	regulatory region 419277	1006 bp distal
Rr419278	regulatory region 419278	within coordinates
Rr419279	regulatory region 419279	38 bp distal
Rr419280	regulatory region 419280	728 bp proximal
Rr419281	regulatory region 419281	999 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron