rs49647355 SNP Detail

Summary

• ID
  rs49647355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66312392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTG TATTTGTAAA CCTCAATTCT
  Y
  CAAACAAATA ATAAGAGTTC TGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145842259	ENSMUSSNP3804500	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss325428356	CHEV_17_66354737	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49647355					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66312392 () rs orientation: forward

Symbol	Name	Function Class
Ankrd12	ankyrin repeat domain 12	within coordinates
Gm49925	predicted gene, 49925	308 bp upstream
Tssr145589	transcription start site region 145589	229 bp upstream
Tssr145590	transcription start site region 145590	272 bp upstream
Tssr145591	transcription start site region 145591	299 bp upstream
Tssr145592	transcription start site region 145592	344 bp upstream