rs49647710 SNP Detail

Summary

• ID
  rs49647710
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110434775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTCATCA GACAAGAAGG
  GAACGGGGAA AGTAAAGGAA GATTCTGTCT AGACCAGCTC GGCGAAGTAA ACCAATTTAT
  TAAACCAAAA GCCGAAACCC TTACGCATCA CATCAGCAAG AGATTCTAGA GTATGGTGAC
  AAAGGAAACT GATGTGGATA TCGTATATAG AGATTGGTGA CACTGTGGCA GAATAAGACT
  S
  TGTATCAGGG GCTGGTGAGA TGGCTCAGTG GGTAAGAGCA CCCGAGTGTT CTTCTGAAGG
  TCCAGAGTTC AAATCCCAGC AACCACATGG TGGCTCACAA CCATCCGTAA CAAGATCTGA
  CTCCCTCTTC TGGAGTGTCT GAAGACAGCT ACAGTGTATT TACATATAAT AATAAATAAA
  TCTTAAAAAA AAAAAAAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61218617	NES16716940	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C	C	C	C	C	G	C	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49647710					SNP	G	C	G	C	C	C	C	C	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61218617	NES16716940	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110434775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16226	CpG island 16226	158 bp distal
Pole	polymerase (DNA directed), epsilon	within coordinates
Pxmp2	peroxisomal membrane protein 2	739 bp upstream
Rr616864	regulatory region 616864	734 bp distal
Rr616865	regulatory region 616865	558 bp distal
Rr616866	regulatory region 616866	within coordinates
Tssr47885	transcription start site region 47885	518 bp downstream
Tssr52499	transcription start site region 52499	881 bp upstream
Tssr52500	transcription start site region 52500	857 bp upstream
Tssr52501	transcription start site region 52501	754 bp upstream
Tssr52502	transcription start site region 52502	732 bp upstream