rs49648489 SNP Detail

Summary

• ID
  rs49648489
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16805279 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T ACCATCCCCC ACCCACTCCC CTACCCACCA AATCCCACTT
  CTTGGCCCTG GAGTTCCCCT GTACTGAGGC ATATAAAGTT TGCACAACTA ATGGGCCTCT
  T
  TTTCCACTGA TGGCCAACTA GGCCATTTTC TGATACATAT GCAGCTAGAG ACACAAACAC
  TGGGGGTACA GGTTAGTTCA TATTGTTGTT CCACCTATAG G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss139716683	ENSMUSSNP1977921	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs49648489					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16805279 () rs orientation: reverse

Symbol	Name	Function Class
Rr370925	regulatory region 370925	1569 bp upstream