rs49648607 SNP Detail

Summary

• ID
  rs49648607
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23925014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG AATAGTTATG GCTGTCTTGG
  T
  AGACTAGGTT GACATTAAAC CCTCG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148807870	ENSMUSSNP724899	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss324291286	CHEV_13_23832900	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49648607					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23925014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	969 bp distal
Gm60901	predicted gene, 60901	1270 bp upstream
H1f2	H1.2 linker histone, cluster member	1500 bp downstream
Rr369656	regulatory region 369656	493 bp downstream
Rr388130	regulatory region 388130	625 bp upstream
Rr475931	regulatory region 475931	1845 bp distal
Rr475932	regulatory region 475932	780 bp proximal
Rr475933	regulatory region 475933	1281 bp proximal
Tssr118855	transcription start site region 118855	1833 bp downstream
Tssr118856	transcription start site region 118856	1096 bp downstream
Tssr118857	transcription start site region 118857	856 bp downstream
Tssr118858	transcription start site region 118858	1270 bp upstream