rs49649247 SNP Detail

Summary

• ID
  rs49649247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:103601767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCATAA GAGTGAGATG
  AGTCCAGTTA CAGCCTTGGA AGACAGACAG ACAGAGAGAC AGCAGATGGA GTTACACATC
  CACCTTAAAA GAGGCGCAGG GCCTTGCAGC ACTGTCTTCC TCCCGTCTAT CCTGCCTCAG
  TCACGGTCAC CTGCCCAAGG GCTCCCTTCC TATGCTACCA CAACCAAAGT TCACTCCCAC
  R
  CGCCTCAGCA TCTCCCGCCT GACCCTCCAT CCACAGTGTG GACTTCTCCA CATTTTAATC
  CAGCCACGGA TAGCCTGTTA GCCGGTGACA CCGCTGCATG ACAAGGACAT TCTCCGAGAG
  CAGTGTTCAC AGTCTGCACA GGTGTGCTTC CCGACATTTT CTGATTTGTG TGTTGGGAAC
  TGAGGAAAAC CATGAAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ
ss61447171	NES16827156	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ
rs49649247					SNP	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61447171	NES16827156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103601767 () rs orientation: forward

Symbol	Name	Function Class
Gm46129	predicted gene, 46129	within coordinates
Rr686004	regulatory region 686004	1220 bp proximal
Tmem108	transmembrane protein 108	Intron