rs49649832 SNP Detail

Summary

• ID
  rs49649832
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164267534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCATCTAG CTCCAAAGGC TGATGAATAT GGATTGCTGG
  AGAGCAGCCA TTTGCTTACT CAGGTTAGCC CTGCATCTGA GCCTTGACCT AAGATATGGA
  R
  TGTAGATTTG ACTCTTTTAG GGGGCTTTCT GCTACCAATA CATCTACCTT GAAAACTTGG
  AATAGAAAAC ACTTATTGAT CAAAGAGGTG GTCAGAATCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NZW/LacJ
ss60337236	NES15839922	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NZW/LacJ
rs49649832					SNP	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337236	NES15839922	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164267534 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr13721	regulatory region 13721	1334 bp distal
Rr20253	regulatory region 20253	134 bp distal
Rr25446	regulatory region 25446	1545 bp distal
Rr25447	regulatory region 25447	1049 bp distal
Rr25448	regulatory region 25448	574 bp distal
Rr31656	regulatory region 31656	67 bp proximal
Tssr9784	transcription start site region 9784	1458 bp downstream
Tssr14736	transcription start site region 14736	1966 bp upstream
Tssr14737	transcription start site region 14737	1906 bp upstream
Tssr14738	transcription start site region 14738	1770 bp upstream
Tssr14739	transcription start site region 14739	1586 bp upstream
Tssr14740	transcription start site region 14740	1545 bp upstream
Tssr14741	transcription start site region 14741	1468 bp upstream
Tssr14742	transcription start site region 14742	1426 bp upstream
Tssr14743	transcription start site region 14743	1593 bp downstream
Tssr14744	transcription start site region 14744	1642 bp downstream