rs49650517 SNP Detail

Summary

• ID
  rs49650517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC AGGAGAAGGA GAAAGGAAAC
  R
  AGAGAGGGAC CTGCACCTAT CCTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss138742421	ENSMUSSNP3185182	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324175501	CHEV_12_114668418	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49650517					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393827 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	321 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	374 bp upstream
Ighj2	immunoglobulin heavy joining 2	692 bp upstream
Ighj3	immunoglobulin heavy joining 3	1075 bp upstream
Ighj4	immunoglobulin heavy joining 4	1640 bp upstream
Tssr115504	transcription start site region 115504	20 bp upstream
Tssr118005	transcription start site region 118005	1660 bp upstream
Tssr118006	transcription start site region 118006	1629 bp upstream
Tssr118007	transcription start site region 118007	1583 bp upstream
Tssr118008	transcription start site region 118008	1556 bp upstream
Tssr118009	transcription start site region 118009	1545 bp upstream
Tssr118010	transcription start site region 118010	1407 bp upstream
Tssr118011	transcription start site region 118011	1309 bp upstream
Tssr118012	transcription start site region 118012	1074 bp upstream
Tssr118013	transcription start site region 118013	1059 bp upstream
Tssr118014	transcription start site region 118014	955 bp upstream
Tssr118015	transcription start site region 118015	859 bp upstream
Tssr118016	transcription start site region 118016	705 bp upstream
Tssr118017	transcription start site region 118017	365 bp upstream
Tssr118018	transcription start site region 118018	169 bp downstream
Tssr118019	transcription start site region 118019	186 bp downstream
Tssr118020	transcription start site region 118020	242 bp downstream
Tssr118021	transcription start site region 118021	382 bp downstream
Tssr118022	transcription start site region 118022	414 bp downstream
Tssr118023	transcription start site region 118023	579 bp downstream