rs49651447 SNP Detail

Summary

• ID
  rs49651447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36919271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGGGTTCG TTCGGCTCGC ATGGGGGCCC CCAGAAATAG
  ACTCTGCGTG CCCTCTTGTG AATGTCACTA TTCGCGACGC TCACCCACCG AGGGGCATCT
  R
  TACCAGGCAT AGAGACACCT ATTTTAGGGG GTTGGAAAGG CTGTCGGGCA AGAAGCCTAG
  GCTAGGGTAA ATTTCGGTTT CTTGTGGTTT ACAAACTCTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61769734	NES17697837	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49651447					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61769734	NES17697837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36919271 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5451	CpG island 5451	within coordinates
Cpgi5452	CpG island 5452	618 bp proximal
Gm56572	predicted gene, 56572	within coordinates
Nrn1	neuritin 1	820 bp upstream
Rr477394	regulatory region 477394	831 bp distal
Rr477395	regulatory region 477395	399 bp distal
Rr477396	regulatory region 477396	within coordinates
Tssr119271	transcription start site region 119271	430 bp downstream
Tssr122097	transcription start site region 122097	1022 bp upstream
Tssr122098	transcription start site region 122098	989 bp upstream
Tssr122099	transcription start site region 122099	912 bp upstream
Tssr122100	transcription start site region 122100	882 bp upstream
Tssr122101	transcription start site region 122101	850 bp upstream
Tssr122102	transcription start site region 122102	805 bp upstream