rs49651843 SNP Detail

Summary

• ID
  rs49651843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132898781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG GCAAGTGCGT TAACACTTTA
  Y
  GGCTGAACTA TATCCCTAGC ATCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147484285	ENSMUSSNP5950398	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321339073	CHEV_4_132727385	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49651843					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132898781 () rs orientation: forward

Symbol	Name	Function Class
Gm55379	predicted gene, 55379	within coordinates
Gm69072	predicted gene, 69072	within coordinates
Rr367727	regulatory region 367727	1701 bp downstream
Rr601216	regulatory region 601216	589 bp distal
Tssr1326	transcription start site region 1326	1219 bp upstream
Tssr43741	transcription start site region 43741	1827 bp upstream
Wasf2	WASP family, member 2	within coordinates