rs49652774 SNP Detail

Summary

• ID
  rs49652774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90293865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGACT AGGGGGAGGG GGAGGGGGCG
  R
  ACTGTGGGAA TCACACCTTC CAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148531508	ENSMUSSNP4793063	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss325275155	CHEV_16_90497222	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49652774					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90293865 () rs orientation: forward

Symbol	Name	Function Class
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519144	regulatory region 519144	819 bp proximal
Tssr139293	transcription start site region 139293	191 bp upstream
Tssr139294	transcription start site region 139294	227 bp upstream
Tssr139295	transcription start site region 139295	1520 bp upstream