rs49653087 SNP Detail

Summary

• ID
  rs49653087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164267754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCACACC AATGGGAATG ATGAGTCACA GCACTCCAAC
  AACAACAACA AAACAACCCG ATCCCACTGA CAAGCTAGCA GGGGATTTGG GTAGGAGGGA
  Y
  AAATAAGAAG CAGCAATGTA TTAACTGGGG ACCAAAATAT TGAAGGAGTC AATGTCCGTC
  ACAGAACAGG ACATTCAGAT GTAGAAGACA GAACTCACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145978655	ENSMUSSNP55674	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49653087					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164267754 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Tssr9784	transcription start site region 9784	1678 bp downstream
Tssr14738	transcription start site region 14738	1990 bp upstream
Tssr14739	transcription start site region 14739	1806 bp upstream
Tssr14740	transcription start site region 14740	1765 bp upstream
Tssr14741	transcription start site region 14741	1688 bp upstream
Tssr14742	transcription start site region 14742	1646 bp upstream
Tssr14743	transcription start site region 14743	1373 bp downstream
Tssr14744	transcription start site region 14744	1422 bp downstream