rs49654616 SNP Detail

Summary

• ID
  rs49654616
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115106170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCG CCCGAGCAGA AAGACTAAGG
  C
  AGGCAATGCT AGGCGGAAAC CAAAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss149119775	ENSMUSSNP5679012	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321653986	CHEV_5_115418120	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs49654616					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115106170 () rs orientation: forward

Symbol	Name	Function Class
Gm71622	predicted gene, 71622	within coordinates
Hnf1a	HNF1 homeobox A	within coordinates
Hnf1aos1	HNF1 homeobox A, opposite strand 1	632 bp upstream
Hnf1aos2	HNF1 homeobox A, opposite strand 2	712 bp upstream
Rr124128	regulatory region 124128	within coordinates
Rr618078	regulatory region 618078	1503 bp distal
Rr618079	regulatory region 618079	1367 bp distal
Rr618080	regulatory region 618080	within coordinates
Rr618081	regulatory region 618081	222 bp proximal
Rr618082	regulatory region 618082	1290 bp proximal
Tssr48194	transcription start site region 48194	648 bp upstream
Tssr48195	transcription start site region 48195	678 bp upstream
Tssr48196	transcription start site region 48196	717 bp upstream
Tssr48197	transcription start site region 48197	1759 bp upstream