rs49655670 SNP Detail

Summary

• ID
  rs49655670
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61177742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCCACA CATGCCAGGC
  AGACCCTGCC CACAGATACA CCAGCAAGTC CCGGAAAGGC AAACCACACA GACAGCCGCA
  TCTGTCACAG ACCTACAGCT GCCACACGGA TACCACCTCA GTCACACAGG GTTTTCTCCA
  TGATCACCCC ACCCCCCTCC GTGGATGTAA CATTTACATG CAGCCCACAA ACGCAAGGCA
  R
  ATGCCACGAA CCCCAATGGG AACTACGCCC CACACCACCA TGACACCGTG TATCATATAT
  TTCTCCAACA GCCGTATGAG CACACGCCCT TCCCTATGAC ATATGGTACA TATGCCTACA
  ACACAGAACA CACAGACTGG CCACGCAACA CAAAGCACAT GAAGGTAGAA TACACAATGA
  GTGGGCCGTG TGTGTGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52341821	NES15289113	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		G
ss323328388	CHEV_10_60804711	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49655670					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52341821	NES15289113	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61177742 () rs orientation: forward

Symbol	Name	Function Class
Pald1	phosphatase domain containing, paladin 1	within coordinates
Rr215532	regulatory region 215532	within coordinates
Rr215533	regulatory region 215533	1659 bp proximal
Rr223113	regulatory region 223113	1304 bp distal
Rr228160	regulatory region 228160	within coordinates
Rr228161	regulatory region 228161	1869 bp proximal