rs49656202 SNP Detail

Summary

• ID
  rs49656202
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180469756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAGCCCC ATTCCCAGTC
  TCCCTCCTGA GTGGATGTGT CTCTAGACTG TGGGGTGGGC ATTACACACG GATGTGAGCA
  CCGCAGCCCA TATAAGTATG TTATTCTGCC TGACACCCAC CCCTGTTCAC TGCCTCACTT
  CTCCTTCTAT ACTCACAACC TCTGAGACGG ATGTTCACCT GTCCGCAGAC AGTAAAGCCA
  S
  CTACTCTGCG ACCTAAGGAC AAGGGAACAA TTTTGTAATT TTCATATTGC ACACATTATT
  AAAAGGCATT TTAGTTACAA AATGGTCTTG AAGCAACACG TACTCTGTGG TGTGTATTTG
  TAGCCCTTGG TCAACGAAAG GTTCGCAGGT GTGGTGGCGC ACATCTTTAA TCTCAGCACT
  CGGTAGGAAG AGGCAGGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60350688	NES15848754	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49656202					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60350688	NES15848754	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180469756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1114	CpG island 1114	91 bp distal
Lin9	lin-9 DREAM MuvB core complex component	within coordinates
Rr29091	regulatory region 29091	within coordinates
Tssr10481	transcription start site region 10481	1485 bp downstream
Tssr10482	transcription start site region 10482	817 bp downstream