rs49656394 SNP Detail

Summary

• ID
  rs49656394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57435877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAATGTT GGAATTATAG
  GAATGTGCCA TCACACCTAG ATATATAATA CTATATGTTT TACTCTGGTT AGTATTTAAG
  ATTTGTTTTC TTTTTGAGAC ACTCTTACTC TACAACCCAG ATTGTGCTTA GAATTCACTT
  ACAGAGCCGG GCACGGTGGC GCATGCCTTT AATCCCAGCA CTCGGGAGGC AGAGGCAGGC
  R
  GATTTCTGAG TTCGAGGCCA GCCTAATCTA CAAAGTGAGT TCCAGGACAG CCAGGGCTAT
  ACAGAGAAAC CCTGTCTCGA AAAACCAAAA AGGAAAATTA AAAAAAAAGA AGAAGAAGAA
  TTCACTTACA GTGCAGGCTG ACCTTGAAAT CAGCACAGGC AACACAGCAA AATCTGTCTC
  AAAAATGAAC AAAAAGACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136519655	ENSMUSSNP193054	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49656394					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57435877 () rs orientation: forward

Symbol	Name	Function Class
Cox5a	cytochrome c oxidase subunit 5A	within coordinates
Tssr85310	transcription start site region 85310	352 bp upstream