rs49656932 SNP Detail

Summary

• ID
  rs49656932
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:34575114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCATTAGT GTGCCACCTC
  CTCCCCCACT ACATCCAGAT GCACATCGAC AGCACAGCTG TCAAGGGGAG AGCAAGGGGC
  TTGAAGGGCT TAAGACAACC TTCGAACAGC CGTCACATTC TCAGAGAGCA GGAAGGACTT
  GGACGGAAGG TGGAAGCTGA ACTCTCTGCT CAGCCTCCCT GATTAATTCT GTGTTTCAGA
  Y
  TCAGTAGCCC ATGAGATCTT CATCTCTTTC AGTTACTCCT CTAAACAGAT GTCCATCTTA
  TAGGCTGTTC CTGTGTCTTT CCTTAGGAGC AAGTCTCTCC ACTTGTCAAC ACAAATACCT
  CTGGCTTCTC CTAGCCTCTG AAACACTAGT GATGCCCAGG TATAGGCCGG AGCACAGACA
  AGCTTTCTGG GCCTTGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61376663	NES16749522	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49656932					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61376663	NES16749522	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:34575114 () rs orientation: forward

Symbol	Name	Function Class
Kirrel3	kirre like nephrin family adhesion molecule 3	within coordinates
Rr203600	regulatory region 203600	1608 bp proximal
Rr208757	regulatory region 208757	within coordinates