rs49656945 SNP Detail

Summary

• ID
  rs49656945
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161323252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATGGAGGA GGGAGGAGCA CATGTCTGTT TGGGAAGCCC
  CTGATGGTTA TCAGGAATTT CCCATTGAAC TCTAGTGTAA ATTGTGGGTC TAGATGGGAT
  W
  TGAACTGGAA ATGTATATCA ATTAGGTTTT TCTAGAAGTG TTCTCTCATA CAGAACAGCC
  AGGGCTGCAG AGAGAGAGAG AGAGAAAAAA AAACAGCAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145915211	ENSMUSSNP5689712	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49656945					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161323252 () rs orientation: forward

Symbol	Name	Function Class
Tnfsf18	tumor necrosis factor (ligand) superfamily, member 18	within coordinates
Tssr9690	transcription start site region 9690	1027 bp downstream