rs49658408 SNP Detail

Summary

• ID
  rs49658408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135108538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATCTTTA GTACCCATTT CTGACCTAGG AGGTGGAGGC
  GGGGGATGAT AGGGACCTTG GCAGAGAGGC AGGAAGGAAC TGGGCTGGAA GTGGCATGGT
  R
  TTTTCAGCTA TGCCCTGTGC ATGCCCGTGT TTGTATCTGT CTAGAATCAC GATGTGCCAC
  AATGCAACTC CTTCCATCTT AGGGTTACAG AGCCCCACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145526776	ENSMUSSNP4965107	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49658408					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135108538 () rs orientation: forward

Symbol	Name	Function Class
Gm70875	predicted gene, 70875	1891 bp downstream
Rr419094	regulatory region 419094	869 bp distal
Rr419095	regulatory region 419095	within coordinates
Tssr13831	transcription start site region 13831	86 bp downstream