rs49658689 SNP Detail

Summary

• ID
  rs49658689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72891583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTCAGGTC TAGATTTAAT GATTTTAAAA AGTCACTTCA
  ATAATCCAAG TCACCAGGTG TCTTATCTAC ACCAAGTCAT GGGGGACCGT GCTATCTCGT
  Y
  TACAGCTCAT AAGTAATCAA AGTAAGTACC ACTTTACAAA CCCACTCACT GTAAAGCCAG
  CTTTGTTATT TAAATTTTCG CCTGTTCACC AAGTTGGAAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61420834	NES16804902	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49658689					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420834	NES16804902	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72891583 () rs orientation: forward

Symbol	Name	Function Class
Ccpg1	cell cycle progression 1	1128 bp upstream
Cpgi22024	CpG island 22024	773 bp proximal
Gm44503	predicted readthrough transcript (NMD candidate), 44503	within coordinates
Pierce2	piercer of microtubule wall 2	within coordinates
Rr401512	regulatory region 401512	1020 bp upstream
Rr682883	regulatory region 682883	1071 bp distal
Rr682884	regulatory region 682884	407 bp proximal
Rr682885	regulatory region 682885	1058 bp proximal
Rr682886	regulatory region 682886	1315 bp proximal
Rr682887	regulatory region 682887	1479 bp proximal
Tssr2935	transcription start site region 2935	997 bp downstream
Tssr86066	transcription start site region 86066	1090 bp upstream
Tssr86067	transcription start site region 86067	1109 bp upstream
Tssr86068	transcription start site region 86068	1226 bp upstream
Tssr86069	transcription start site region 86069	1267 bp upstream
Tssr90501	transcription start site region 90501	982 bp downstream
Tssr90502	transcription start site region 90502	1036 bp downstream
Tssr90503	transcription start site region 90503	1043 bp downstream