rs49660244 SNP Detail

Summary

• ID
  rs49660244
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13427304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTGCCTG TCTCTGCTTC CGAGTGCTGG GATTAAGAGT
  GTGTGCCACC ACACCCAGTT TTTTCCTTCC TCTTCATCTC CAAATATAAA ACTCTCAATA
  K
  CGTTTCAAAA AAAACCTATT ACTATATGCA TATACTCTTT AATTTCTCCT ATGATTATTT
  CTGATCTGCC ATTAAGTATT TCATAAACTG TAAGGGTTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146822637	ENSMUSSNP3287132	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49660244					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13427304 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	1347 bp upstream
Cpgi1315	CpG island 1315	1291 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	1379 bp upstream
Rr427802	regulatory region 427802	1007 bp proximal
Rr427803	regulatory region 427803	1268 bp proximal
Rr427804	regulatory region 427804	1345 bp proximal
Rr427805	regulatory region 427805	1550 bp proximal
Tssr92399	transcription start site region 92399	1627 bp upstream
Tssr92400	transcription start site region 92400	1685 bp upstream
Tssr96771	transcription start site region 96771	1295 bp downstream
Tssr96772	transcription start site region 96772	1439 bp downstream
Tssr96773	transcription start site region 96773	1503 bp downstream
Tssr96774	transcription start site region 96774	1551 bp downstream
Tssr96775	transcription start site region 96775	1580 bp downstream
Tssr96776	transcription start site region 96776	1595 bp downstream