rs49660299 SNP Detail

Summary

• ID
  rs49660299
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:40529002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ATGTCCTGAA GGACCTTACA CTAGCCTTGG ATCACCTTGA
  TTTCTGTAAC TTTGACTATT AATGTCCTCA AGGTCACATG GCTCCACACA ACTTTTTATT
  C
  TGGTTGAATA AGAATTCTGG CTGGTGCTCA CTTCAGCAGC ACATATACCA AAAAAAAAAA
  AAAAAAAAAG AAAGAAAAAG AAAAAAATTG GAAATATAGA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss149000139	ENSMUSSNP4481543	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49660299					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:40529002 () rs orientation: forward

Symbol	Name	Function Class
A230077H06Rik	RIKEN cDNA A230077H06 gene	within coordinates
Gm25784	predicted gene, 25784	80 bp upstream
Gm28307	predicted gene 28307	within coordinates