rs49660325 SNP Detail

Summary

• ID
  rs49660325
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77543146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAAAGACA GCTACAGTGT ACTTAAATAA AAAAAATAAA
  AAAAATAAAA AAGAATGCAG AAAGGTTTCT CAGTAGGCCA CGGACAGCAT CGGACTGATG
  M
  GGGTTATTAG GAAGTTTCTT TTCAATGATC TATCTGCCCG TTACTGAAGA TGATACCACA
  CTGACCTTTA GAAAGTCATT TCGTACTCCA GGTGCCTATA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61429416	NES16808705	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49660325					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61429416	NES16808705	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77543146 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	within coordinates
Klhl31	kelch-like 31	868 bp upstream
Rr683389	regulatory region 683389	146 bp proximal
Rr683390	regulatory region 683390	647 bp proximal
Rr683391	regulatory region 683391	953 bp proximal
Rr683392	regulatory region 683392	1550 bp proximal
Tssr86194	transcription start site region 86194	605 bp upstream
Tssr86195	transcription start site region 86195	630 bp upstream
Tssr86196	transcription start site region 86196	672 bp upstream
Tssr86197	transcription start site region 86197	711 bp upstream
Tssr86198	transcription start site region 86198	755 bp upstream
Tssr86199	transcription start site region 86199	757 bp upstream
Tssr86200	transcription start site region 86200	772 bp upstream
Tssr86201	transcription start site region 86201	849 bp upstream