rs49660912 SNP Detail

Summary

• ID
  rs49660912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76496331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATTCATT GCTTTTGCCT
  GATTGAAAAC TTGCCTTTGG TTTTCTAGCC TCCAGAACTG AGAGAATAAA GTTCTGCTCT
  TTCGGCACCT AGTCTAGGGT AGACAATTAT GTCAACCTCC AAAGGCTAAT GCAAGGGGAT
  TTGGAATAGC CGATTCTGCC GAGAGCTCCA CATTAACAGG TTGTCCTTTG GTTTGATCAT
  Y
  TCTAGGCTTC TCTTCATGGC AGAAATGAGC CCTCCCTCAT ATTTGTAAGC AACGTTGGTA
  ATGTTTTGAC TCGAGACAAG GACCCCATCA GATCCTGGAG AACTCTGACC GTTCCCCAGG
  TTTGATTATA GGAAAGACAA TCTGGCTGTC CACAGGACCC CCAGTGGAGC CGTCCATAGC
  AAACGCTGAA GATGGAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63562844	NES17021994	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49660912					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63562844	NES17021994	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76496331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7242	CpG island 7242	423 bp proximal
Gm62519	predicted gene, 62519	706 bp upstream
Rr311946	regulatory region 311946	469 bp proximal
Slc39a4	solute carrier family 39 (zinc transporter), member 4	252 bp downstream
Tssr135019	transcription start site region 135019	569 bp downstream
Tssr135020	transcription start site region 135020	792 bp downstream
Tssr135021	transcription start site region 135021	834 bp downstream