rs49660964 SNP Detail

Summary

• ID
  rs49660964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127690788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGTTATG TGTTGTGAGA
  AAGTGTGTGT AAGAAACATT GTAACAGACT GTAACCAAGT GCTTACAGGA GATTATATGA
  AAAAGACCAT TAGATGCATG AGACCCTGTC TGATAGAGTA TTATAAAAGC CTGTGTCTAA
  TTGTGTGCCT GTACACAACA GATTGTGGAA GACTGTATAC CAGAGTCTTT TGTGACAGGA
  Y
  AGTGTGGGAG ATCATAGGTG TTGAAAGTTT GTGTGAGGAT GTAGGTATAC AGAAGAGGGC
  AACTGAGAAT AAGAAGCTCA TATGAGAGGG AGCTGTGTGC ATGAAGGTGT GGGCACATGT
  AAGAGGTTCT GGGAGTGTGA AAGACCACCC AAACACACAG TATCCCTCCA TACCAGCTGC
  AGCGGGCGCT CAGCTGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874484	ENSMUSSNP5065915	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320957998	CHEV_3_127600057	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49660964					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127690788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	616 bp distal
Fam241a	family with sequence similarity 241, member A	816 bp upstream
Rr398009	regulatory region 398009	566 bp downstream
Rr584896	regulatory region 584896	1120 bp distal
Rr584897	regulatory region 584897	325 bp distal
Tssr35607	transcription start site region 35607	1626 bp upstream
Tssr35608	transcription start site region 35608	906 bp upstream
Tssr35609	transcription start site region 35609	869 bp upstream
Tssr35610	transcription start site region 35610	802 bp upstream