rs49661838 SNP Detail

Summary

• ID
  rs49661838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6881977 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      G ATTGGAGTCC TGGGTGCTGA GAGCACCTTC TAAGCTTCAT
  TCAGGTGTAG CCAGGTGCCA GCATCGCCAT GGTGTCAGCT TGAGTCTGTG GGAAAGCTCA
  Y
  ACAGTGCTGA AGCTCTAGTT CCGCTGTGCC CACATCCGGT CCATAGCTTG TTGCTCTTGC
  CGTCCCTGTC TGAGGTCAGG CTGAGGGACA GCAGCTGTGT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60526294	NES16538758	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C	T	T	C
ss145090424	ENSMUSSNP4388861	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss145092758	ENSMUSSNP2931406	ENSEMBL	ENSEMBL_Sanger	r	SNP									A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49661838					SNP	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60526294	NES16538758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6881977 () rs orientation: reverse

Symbol	Name	Function Class
Rr521399	regulatory region 521399	1282 bp proximal
Tmem181c-ps	transmembrane protein 181C, pseudogene	within coordinates