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rs49662432 SNP Detail
Summary
  • ID
    rs49662432
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:84565374 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATACACACAC ACACACGGAC
    ACACACACCC CACATAATGT TAGGAAACTG ATGAAGAGGA GGAGGAGGTG GAGGAAGAAG
    AATCCAGTTC ACAGGTGTTT GCAGCAAGCC TGGCTAAGCT GAGGCCTTGT CCTCTGAAGA
    CCTGTATCTG GTGGCCGTGC TGAATCAATG TTGAGGATAC AGTATCTTAG TCAGCCCTGC
    Y
    ATTTTCTTTC TTCAGGGTTT ATATTTATTT ATGTGTATGT GTGTATCTTT ATGAGACTCT
    ATCACATATG CATGCAGGTA CGTGTGAAGG CCAGAAGAGG GCGTTGGATC CCTTGGATCT
    GGAGTTCCAG GCAGATGTAA GGCATCTAGC ATAGGTGCTG GAAAACAAAC TTGGGTTTTT
    CAGAAGAAGA GCTGGTGTTC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
ss135427430 ENSMUSSNP5551894 ENSEMBL ENSEMBL_Sanger f SNP C T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
rs49662432 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:84565374 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm37240 predicted gene, 37240 within coordinates
Rr68541 regulatory region 68541 1974 bp distal
Rr68542 regulatory region 68542 27 bp proximal
Rr68543 regulatory region 68543 827 bp proximal
Rr76452 regulatory region 76452 918 bp proximal
Rr83250 regulatory region 83250 1897 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory