rs49663490 SNP Detail

Summary

• ID
  rs49663490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108776115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAC TGGATTCCTA GCAACCATAC
  R
  GAGGTTAACG ACTGTCTCTA ACTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149026496	ENSMUSSNP500804	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321637448	CHEV_5_109057268	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49663490					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108776115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	895 bp proximal
Gak	cyclin G associated kinase	within coordinates
Rr616724	regulatory region 616724	1480 bp proximal
Rr616725	regulatory region 616725	1771 bp proximal
Tmem175	transmembrane protein 175	1534 bp upstream
Tssr47844	transcription start site region 47844	1542 bp upstream
Tssr47845	transcription start site region 47845	1741 bp upstream
Tssr47846	transcription start site region 47846	1779 bp upstream
Tssr52443	transcription start site region 52443	1422 bp downstream
Tssr52444	transcription start site region 52444	1437 bp downstream
Tssr52445	transcription start site region 52445	1463 bp downstream