rs49663577 SNP Detail

Summary

• ID
  rs49663577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78355604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGAGA ACGCACAGGG
  CCTGCGCGCA CCTCCCCGCG GCGAAGCTCC AACCCGCCAA TCAAAAGCGT CGCTGGACGC
  AGGCGCGCTA CGCGCTGACT CGGCCAAGAT GGCGACGCCC AGCTGGCTTC TACTCCGGTG
  ACAGTTCCGG GCGTCTCTAG CTAGCTTCCC TCAACATGTT CCTTCTCCGA GGCCGTGGCC
  R
  TTGGGCCGCA GCGTCCCTCG GCAGACGGCT GCCTTTGCGT CGCCTCCGCA GCGACAGCGC
  GGCGCCCTGC ACCCCGCACT TCGACGTGGT AGTTATCGGA GGAGGGCACG CGGGGACCGA
  GGCGGCCGCC GCCGCCGCTC GCTGTGGCTC GCGGACCCTG CTTCTCACGC ACCGCGTGGA
  CACGATCGGT GAGGAGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61427217	NES16810959	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49663577					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427217	NES16810959	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78355604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	within coordinates
Gm17324	predicted gene, 17324	within coordinates
Mto1	mitochondrial tRNA translation optimization 1	within coordinates
Rr401544	regulatory region 401544	within coordinates
Rr683554	regulatory region 683554	104 bp distal
Rr683555	regulatory region 683555	454 bp proximal
Tssr86287	transcription start site region 86287	94 bp downstream