rs49663649 SNP Detail

Summary

• ID
  rs49663649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:16422809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAACCCAG TGTGATCAGC
  TGGTGGCTGT GACTTAAAGC TCAGTAGGAT CCTGAATGTG ATGACCAGAG GACACAGCTC
  CTTTAGAGAC TTTTATCCTT CTAGAGCCAC AGAGTCTAGA GATTTGGAGA TGGAAACATA
  AATTCTAGAA AATGGGTATC AAGGGTTTAT GGGAACTCAA GACATTCCCA AGTCTACATG
  Y
  TAATTTCCAG ACTTATGTAT TCATCCAATT AGCGATGCTA TATTAACAGC TCCAGAGATG
  AGGTGCAGGG CATCACTATG GAGGATAGTG CTTCTGAACA AGAAGAGCCG TCTCTAAGCT
  GGTACCCTGG TGAACCTATA TGGAACTGTT TCGCCTTGCA GTTAGGCTGG TGGTTTCTGA
  GATGTATGTG TAGGCTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61574891	NES17524987	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs49663649					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61574891	NES17524987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16422809 () rs orientation: forward

Symbol	Name	Function Class
Gm36372	predicted gene, 36372	within coordinates
Rr262937	regulatory region 262937	1472 bp distal
Rr269311	regulatory region 269311	1578 bp proximal
Rr386910	regulatory region 386910	1618 bp upstream