rs49663895 SNP Detail

Summary

• ID
  rs49663895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:124223038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCCCTCAA GGTCGGGTCT CTGTCTCCTC GGGGTGTCTT
  CACTGCAATT TGCTTAGGCT GATCTGGGCT TGAGGCTGGA CCCAGGTAGG TTCTCCATAC
  R
  CAACAGCTTG CACTCTGGCC TTCTGTGGGG AAATGGCGCC CTCTGCTGGA TGAGAAGCAG
  GAAACTCGAG GACGCCATCT AGCTCTGGCC AGATGGGGTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60835694	NES16008612	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49663895					SNP	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835694	NES16008612	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124223038 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abcb9	ATP-binding cassette, sub-family B member 9			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr620354	regulatory region 620354			33 bp proximal
Tssr53310	transcription start site region 53310			1846 bp upstream
Tssr53311	transcription start site region 53311			1488 bp upstream