rs49664123 SNP Detail

Summary

• ID
  rs49664123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21877429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgttcccag gaaagaaatt gcagagccac
  acattaattt tatctttatt ttttaaatac tcttcaaaat tatttccatt tgagtgcatt
  aatttgtacc cccCTCTCTC TTacacacac acacacacac acacacacac acacacacaT
  R
  TCATCCCATC TGTGTTCCTC TATAAGGCCC AATTACAGAC AGGATTGATT CAATGTCAAT
  AGTTTAGCAT GATTTTCAGG TATAGCATTT TAAAGCAAGT GTACTCATCA CGAACTATCC
  TTCTGAGACA TGCACACTGT CATTCTGAGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60549938	NES16568131	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		G	G		G
ss325322464	CHEV_17_21795480	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49664123					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60549938	NES16568131	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21877429 () rs orientation: forward

Symbol	Name	Function Class
D17Jcs131	DNA segment, Chr 17, John C. Schimenti 131	within coordinates
Gm53991	predicted gene, 53991	1672 bp downstream
Zfp983	zinc finger protein 983	within coordinates