rs49664438 SNP Detail

Summary

• ID
  rs49664438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21424275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCACTGA AAATGCTCAG
  GGGACTGTAC ATAGACTTAT GCAAAGACAT TTATTTGCTC CTTGGTTCCT TACTCTAGGC
  AGTCTCCTAG TGAACAGGAG CGACCATCTA CCCCCTAACT CTTGTAGTTG GTTTCCCTAC
  TCGACCCCTT GTGGTTTTGC GGTCTTTTTT TTTTTTTTTT TCCCTGTGTT ATTGTTTGTG
  R
  TACTGAACAT TAATAGCCCT GGTCAGATTT CAAGTCGTCT TCCAGAAAAA GATAAACTGA
  TTTAAATTTG TTCGTTGTGG AATGTCTTGC AACATTTTCA ACAGTTACTG ACTTTGCACA
  TTTTTTTGGG GGGCATGTTA GCTAAACTAG TCTGTACAAC CGAGGTATAA ACACTTTCAC
  TAGGTACACA TTCAAGGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52314538	NES15371805	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G	G	G	G	G	G	G	G	G	G
ss137298196	ENSMUSSNP1090278	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49664438					SNP	G	A	A	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314538	NES15371805	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21424275 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	642 bp upstream
Cpgi4477	CpG island 4477	67 bp distal
Gm49586	predicted gene, 49586	within coordinates
Rr463712	regulatory region 463712	835 bp distal
Rr463713	regulatory region 463713	591 bp distal
Rr463714	regulatory region 463714	710 bp distal
Rr463715	regulatory region 463715	within coordinates
Rr463716	regulatory region 463716	530 bp distal
Rr463717	regulatory region 463717	42 bp distal
Tssr112932	transcription start site region 112932	495 bp downstream
Tssr112933	transcription start site region 112933	17 bp downstream
Tssr115856	transcription start site region 115856	782 bp upstream
Tssr115857	transcription start site region 115857	756 bp upstream
Tssr115858	transcription start site region 115858	728 bp upstream
Tssr115859	transcription start site region 115859	682 bp upstream
Tssr115860	transcription start site region 115860	657 bp upstream