rs49665171 SNP Detail

Summary

• ID
  rs49665171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27209305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATGGCA TGAGAGCAGA
  CAGAGACTGC AGGGAAACAG AACCCAAGCT CGTTGTTAAG GAATGAAGCA GACATGCCAC
  CTCCAGCATA AGATCAAGAG GGAGGTCAGG AGTGCATACC CACTTCCATC AGTACCGTGG
  GTTCTTGCAC CTGGCCCTAA AGGTAGATAA AGATCAATGA GTGATTAAAT AGCAAACTCT
  Y
  ATGACAGGAT GAGCCTGCCT GCTGCACAGT AAAACAAGAC TTACTTCTCC ATGAGCCAGC
  ACTACCTGTC CAGAACCTTA CTATGGACCA GACTTCTAGT GAACTGACCC CAGCTGGGCT
  TTCAAGACCC CGGAGTCTAA CCTAGCCCTT GGCTGCAGCC ACCAGGGCAA TGTTCTGGCC
  TAAGTCTGAA GCTGTTACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52338295	NES15368988	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49665171					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52338295	NES15368988	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27209305 () rs orientation: forward

Symbol	Name	Function Class
Silc1	sciatic injury induced lincRNA upregulator of SOX11	within coordinates
Tssr115957	transcription start site region 115957	1141 bp downstream
Tssr115958	transcription start site region 115958	1171 bp downstream
Tssr115959	transcription start site region 115959	1192 bp downstream