rs49665543 SNP Detail

Summary

• ID
  rs49665543
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24570423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT GGACCGTGAC TTTCCCTTTC
  T
  TAGCTGTGGG CTGTCGCCTC TGAAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145351468	ENSMUSSNP1719019	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325330823	CHEV_17_24488394	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49665543					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24570423 () rs orientation: forward

Symbol	Name	Function Class
Abca3	ATP-binding cassette, sub-family A member 3	574 bp upstream
Abca17	ATP-binding cassette, sub-family A member 17	381 bp upstream
Cpgi8716	CpG island 8716	within coordinates
Rr405082	regulatory region 405082	269 bp upstream
Rr523280	regulatory region 523280	431 bp distal
Rr523281	regulatory region 523281	within coordinates
Rr523282	regulatory region 523282	209 bp distal
Rr523283	regulatory region 523283	455 bp proximal
Rr523284	regulatory region 523284	608 bp proximal
Rr523285	regulatory region 523285	658 bp proximal
Tssr143021	transcription start site region 143021	488 bp upstream
Tssr143022	transcription start site region 143022	505 bp upstream
Tssr143023	transcription start site region 143023	568 bp upstream
Tssr143024	transcription start site region 143024	588 bp upstream
Tssr146725	transcription start site region 146725	385 bp upstream
Tssr146726	transcription start site region 146726	341 bp upstream