rs49665887 SNP Detail

Summary

• ID
  rs49665887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185020485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTCCCG TGGCTCCTGA
  GCCAGCAATG TCGTCTGGGA AGCCATCATC AGCTCATTCA GCTGAGACGT GCTAGAGGTC
  TCCTCAGCTT GGAGCATCTG GAATGCATGT GAAAGTTACT GTTCCAATTA AAAATTGACA
  GTCACTTTTA GCTGTTGACT GGAGTATACA TTTTGCTTCA CTCTGAAAAC TATGTCCCTC
  Y
  CACCCCCCCA AAACCCCAGT CTATATCGTG TTTATTATAC TTATTTTGCA ATGAGAAAAG
  AAAAAAGAGG TTCAGTTACC CTTGTCTGTT AAGCTAAAAC TGCCAACTTT TTAGAGCCTC
  CTTTCCAATC ATGATTCCTC TATTAGGAGT TAAGATACTG TTAAATAGGC GGCTGGAGAG
  ATTGCTTGGC AGTTAAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146426577	ENSMUSSNP5756671	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49665887					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185020485 () rs orientation: forward

Symbol	Name	Function Class
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Rab3gap2	RAB3 GTPase activating protein subunit 2	1529 bp downstream