rs49666877 SNP Detail

Summary

• ID
  rs49666877
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32699482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC AGCTGAGCTG AGGAGCTCAA
  T
  AGTCTCAGAC CTACTCCACT TGTTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147955006	ENSMUSSNP1997861	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss325137995	CHEV_16_32879198	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49666877					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32699482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	537 bp distal
Fyttd1	forty-two-three domain containing 1	within coordinates
Rr404782	regulatory region 404782	997 bp downstream
Rr514843	regulatory region 514843	1357 bp distal
Rr514844	regulatory region 514844	972 bp distal
Rr514845	regulatory region 514845	441 bp distal
Rr514846	regulatory region 514846	within coordinates
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	1361 bp upstream
Tssr138060	transcription start site region 138060	1281 bp downstream
Tssr138061	transcription start site region 138061	1249 bp downstream
Tssr138062	transcription start site region 138062	1218 bp downstream
Tssr138063	transcription start site region 138063	1017 bp downstream
Tssr138064	transcription start site region 138064	991 bp downstream
Tssr140832	transcription start site region 140832	1477 bp upstream
Tssr140833	transcription start site region 140833	1438 bp upstream
Tssr140834	transcription start site region 140834	1397 bp upstream
Tssr140835	transcription start site region 140835	1370 bp upstream