rs49668242 SNP Detail

Summary

• ID
  rs49668242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153561606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAGACAGG AACTCTCTGT
  GTAGCCTTGG CTGAACCAGG CTTAATAAAG TCAATCTATA TTACCAATAA ATTCTGTAAA
  ATATCCACAT ATTTAAAAAC TATATGAAGG TTAAAAAGAT GGCTCAGTTG TTAAGTTGTT
  ACTTTTTGCT ATTCCACAGG ACCTGAGTTA GATTCTAGGA CCCACACTGG GAGCTTGCAG
  Y
  CATTTGATAA ATCCATTTTG AGGGGGTCCA GTGCCCTGGC CTGGCCTCTG CTGGTACCAA
  GTGAATGTGG CACATACTCA TACAGACAAA AACACAGACA CATGAACCAG TCACAGCATA
  TGCAGTCTGT GAATAATTTT GTTGTTCCAA TTACTATGAA TATTGCAACT CCTAAATAAA
  TGATTCAGGG TACACCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136114443	ENSMUSSNP476689	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49668242					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153561606 () rs orientation: forward

Symbol	Name	Function Class
Msh4	mutS homolog 4	1177 bp downstream