rs49668265 SNP Detail

Summary

• ID
  rs49668265
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106106064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTCCTTCC TTCTTCCATA GTTTGGTCTT TTGCTGTAAT
  TTCTCCCACA TTTTGATGGA CAAAGAGGCA ACTGGGAGAG ATTTTTACTT GTTTCATTCT
  A
  AGAAATGCTT GAACAGATAT TTGTAGAATG TCCTGAATCT CTGAGGAATT CTCACCAAAA
  ATATTGATCA GAGTCAAATT TCCAAGGCCA ATCACAAAT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145614865	ENSMUSSNP6462199	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322371922	CHEV_7_113650371	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49668265					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106106064 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74129	transcription start site region 74129	1902 bp upstream
Tssr74130	transcription start site region 74130	1853 bp upstream
Tssr74131	transcription start site region 74131	1642 bp upstream
Tssr74132	transcription start site region 74132	1466 bp upstream
Tssr74133	transcription start site region 74133	809 bp upstream
Tssr74134	transcription start site region 74134	554 bp upstream
Tssr74135	transcription start site region 74135	474 bp upstream
Tssr74136	transcription start site region 74136	428 bp upstream
Tssr74137	transcription start site region 74137	362 bp upstream
Tssr74138	transcription start site region 74138	324 bp upstream
Tssr74139	transcription start site region 74139	282 bp upstream
Tssr74140	transcription start site region 74140	229 bp upstream
Tssr74141	transcription start site region 74141	146 bp downstream
Tssr74142	transcription start site region 74142	289 bp downstream