rs49668267 SNP Detail

Summary

• ID
  rs49668267
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40056788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAA TTGATGCTTC TGAACAGGGC
  G
  TTCAGCATCT ATTTTTATCT AAAGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss144619547	ENSMUSSNP4401171	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322624420	CHEV_8_40689101	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49668267					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40056788 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr2550	transcription start site region 2550	1720 bp downstream
Tssr80996	transcription start site region 80996	790 bp downstream
Tssr80997	transcription start site region 80997	839 bp downstream
Tssr80998	transcription start site region 80998	1213 bp downstream
Tssr80999	transcription start site region 80999	1277 bp downstream
Tssr81000	transcription start site region 81000	1472 bp downstream
Tssr81001	transcription start site region 81001	1528 bp downstream
Tssr81002	transcription start site region 81002	1542 bp downstream
Tssr81003	transcription start site region 81003	1564 bp downstream
Tssr81004	transcription start site region 81004	1624 bp downstream
Tssr81005	transcription start site region 81005	1645 bp downstream
Tssr81006	transcription start site region 81006	1682 bp downstream
Tssr81007	transcription start site region 81007	1747 bp downstream
Tssr81008	transcription start site region 81008	1857 bp downstream
Tssr81009	transcription start site region 81009	1873 bp downstream
Tssr81010	transcription start site region 81010	1900 bp downstream
Tssr81011	transcription start site region 81011	1978 bp downstream