rs49668341 SNP Detail

Summary

• ID
  rs49668341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43087434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATGAGAT GGAGCCAGAC
  TCCATTTTCT CAAGTCCAGA CATTCTTCTC CTGGTCCTTC TACCTAGGCT GGGTCTCCTT
  CATCCTCTTC CTCTTTGCAG GTGACTACTC AGCCCACCTC CCTGGGGGAG GACCACGATG
  GGGGCTGGCG CAGGGCAGTG CAGGGCACTC AAGTACTTAA TCTCTGCTCC CTGCCCCCCT
  Y
  CCCCTCCCCC GCTTTCTCTC CACACCAGGC TGCCTGAGCC TGGGTGCTCA CTGTAGAACC
  CGTCGGGCTG AGTATGAAAC CTTGTGAACA GCAGCCAAGG ACAGCAGGGT CATCAGGATG
  TTTGGAGCCT GTCCTCTCAG GAGCTACAAA AGGAATGCAG AATTCTGTCT CTGTCCCTCC
  CACCTTGCCT TATCCTTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss149072712	ENSMUSSNP3172787	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49668341					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43087434 () rs orientation: forward

Symbol	Name	Function Class
Nkg7	natural killer cell group 7 sequence	within coordinates
Tssr2210	transcription start site region 2210	991 bp downstream
Tssr65999	transcription start site region 65999	1029 bp downstream
Tssr66000	transcription start site region 66000	836 bp downstream
Tssr66001	transcription start site region 66001	414 bp downstream
Tssr66002	transcription start site region 66002	386 bp downstream