rs49671089 SNP Detail

Summary

• ID
  rs49671089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17692462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTACAACC TACAGTTGGA
  GTCTGGAGGC CTGAAGGTGG CACTGGTCCA AGTCCTGGAG TCTAAAGCCT GGAGTTCTCA
  TGGCCAATGT CAACAGAAGA AGAGGTCAAA ATGCCTCTTC TGTGGTAGAA GGAGAGTACA
  TTCTCTCTAG TTCTATGGTC TCCAGGTTCT TGAATGGTAC TCACACACAC TGAAGGTGAA
  Y
  ATTCCCCATC AAATGTGCTC ACACTCACTT CTCAGTCTCT TCTGGAAAGA CCCTCGCAGG
  CAATCCCCAA ACCACTCCTT AGTGCAATTG AGTTTGCCAC CTGGAACTGT CACAAACAGG
  CCCCACATCT ACAAATTAAC TCAGCCTGTT TTACTATGGA AGAAACTACA AGTCCTTGTA
  GGAGCAGAAA GGTGTAACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133020660	ENSMUSSNP654938	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49671089					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17692462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1212 bp proximal
Gm55211	predicted gene, 55211	963 bp upstream
Gm55212	predicted gene, 55212	1474 bp upstream
Rr626833	regulatory region 626833	within coordinates
Rr626834	regulatory region 626834	1114 bp proximal
St7	suppression of tumorigenicity 7	1117 bp upstream
Tssr55085	transcription start site region 55085	1144 bp upstream
Tssr55086	transcription start site region 55086	1442 bp upstream
Tssr55087	transcription start site region 55087	1502 bp upstream
Tssr55088	transcription start site region 55088	1542 bp upstream
Tssr55089	transcription start site region 55089	1588 bp upstream
Tssr55090	transcription start site region 55090	1707 bp upstream