rs49671347 SNP Detail

Summary

• ID
  rs49671347
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45109721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGTCGCA GGGTTCTGGG
  CTCCGGGTCA CTGAGACCCT GGGGAGGGGA TGACTTCGAG GTCCTTTTCT GGGTGTCTCA
  CAAAAGAGAA TTTTGGGGCC TGAGAACATG GATCTGGGGA TGGGCTGAGT GTGGGGTAAT
  GTCTGTAAAT GCAAAGGGAA CCTCCATATG TCCAATTGCA CACAATGAAG GGATATGTCA
  M
  GTCATGAGGA AGTCTGGTAT TCCAAAGATT CTAGAGATCT CCTTGAGGGA ATGGAAGGGA
  TGCCCAGAAG TATAGGGTTT TAGGTTCACC ATAGGAACTA AGATTGTTTG CTTGTTTTTC
  TGTTTTCTGT AACCCAGGAG GTCGTGAAGC CCTTTGAGGG CTTGGAGTGG GCAGAGAGCC
  TTGGGTTACC GTGTGTGCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61003434	NES16114213	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49671347					SNP	C	C	C	C	C	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003434	NES16114213	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45109721 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	1400 bp downstream
Cpgi19060	CpG island 19060	867 bp distal
Cpgi19061	CpG island 19061	163 bp distal
Ftl1	ferritin light polypeptide 1	413 bp upstream
Gm10252	predicted gene 10252	within coordinates
Gm73429	predicted gene, 73429	within coordinates
Gm73431	predicted gene, 73431	712 bp upstream
Rr380754	regulatory region 380754	within coordinates
Rr646450	regulatory region 646450	within coordinates
Rr646451	regulatory region 646451	188 bp distal
Rr646452	regulatory region 646452	222 bp proximal
Rr646453	regulatory region 646453	723 bp proximal
Rr646454	regulatory region 646454	1156 bp proximal
Tssr66541	transcription start site region 66541	609 bp downstream
Tssr66542	transcription start site region 66542	767 bp upstream
Tssr72392	transcription start site region 72392	1949 bp upstream
Tssr72393	transcription start site region 72393	1884 bp upstream
Tssr72394	transcription start site region 72394	1738 bp upstream
Tssr72395	transcription start site region 72395	872 bp upstream
Tssr72396	transcription start site region 72396	840 bp upstream
Tssr72397	transcription start site region 72397	566 bp upstream
Tssr72398	transcription start site region 72398	416 bp upstream
Tssr72399	transcription start site region 72399	625 bp downstream
Tssr72400	transcription start site region 72400	663 bp downstream