rs49671602 SNP Detail

Summary

• ID
  rs49671602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73421449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATTGAA AACAGGAAAG
  AAAAAAAAAC CCAACAGAGA AAGATTAATA ACAGGAAAAC CTGGTTCTCT GAGAAGCCCA
  ATAAAATGGG TAAGTGTCAC AGACAGGAGG AAAGTATCCT GACTTTGCCT GCAGACCAAG
  AGTTGTATCT TAGACTGAAC CGTGGCTGCA GTCTGTGCTT GACCTTAATG CCACCCAATC
  Y
  GACTGCAGCG GCCTCCAGTG GCCTCCCCAG AGTTAAGGGG AGAAAAGTTG GGAGCCCTTT
  GGCACCTTTT CTTCTGCAAT GGCGTCCTTC TGGCCTGAAC TGTGGGCAGC AGTCAGTTTT
  GGCCTTGCTC TCTTTTATTT CATCCTTAGT CAGTGGGTGG AGGCCAAAAT AGAGAAGAGC
  TCTCGGGAGT GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ
ss61644180	NES17584889	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ
rs49671602					SNP	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61644180	NES17584889	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73421449 () rs orientation: forward

Symbol	Name	Function Class
D830013O20Rik	RIKEN cDNA D830013O20 gene	within coordinates
Rr257323	regulatory region 257323	within coordinates
Rr261220	regulatory region 261220	1152 bp proximal
Rr264130	regulatory region 264130	within coordinates