rs49671659 SNP Detail

Summary

• ID
  rs49671659
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:52061485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACGC TGGACAGCAC AGGCTTTGCT
  A
  TCATATTCTC TGATGACATC AACGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146585141	ENSMUSSNP2081807	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320302498	CHEV_2_52026993	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49671659					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52061485 () rs orientation: forward

Symbol	Name	Function Class
Neb	nebulin	Intron
Rr556915	regulatory region 556915	1846 bp distal
Tssr24034	transcription start site region 24034	1523 bp upstream
Tssr24035	transcription start site region 24035	954 bp upstream